5-hydroxymethylcytosine-mediated DNA demethylation in stem cells and development.
Sun W, Guan M, Li X.
Stem Cells Dev · research support, non-u.s. gov't; review; journal article · DOI 10.1089/scd.2013.0428 PUBLIKATIONSREGISTRET
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Publikationer i urvalet
16 träffarA new insight into the 5-carboxycytosine and 5-formylcytosine under typical bisulfite conditions: a deamination mechanism study.
Jin L, Wang W, Hu D, Lü J.
Phys Chem Chem Phys · research support, non-u.s. gov't; journal article · DOI 10.1039/c3cp54266aPRDM14 promotes active DNA demethylation through the ten-eleven translocation (TET)-mediated base excision repair pathway in embryonic stem cells.
Okashita N, Kumaki Y, Ebi K, Nishi M, Okamoto Y, Nakayama M, Hashimoto S, Nakamura T, Sugasawa K, Kojima N, Takada T, Okano M, Seki Y.
Development · research support, non-u.s. gov't; journal article · DOI 10.1242/dev.099622Systematic investigation of DNAs with modified cytosines under hot alkali treatment.
Tian T, Zhang X, Fu B, Long Y, Peng S, Wang S, Zhou X, Zhou X.
Chem Commun (Camb) · research support, non-u.s. gov't; journal article · DOI 10.1039/c3cc45423aCGmCGCG is a versatile substrate with which to evaluate Tet protein activity.
Kizaki S, Sugiyama H.
Org Biomol Chem · journal article · DOI 10.1039/c3ob41823eDivergent mechanisms for enzymatic excision of 5-formylcytosine and 5-carboxylcytosine from DNA.
Maiti A, Michelson AZ, Armwood CJ, Lee JK, Drohat AC.
J Am Chem Soc · research-article; research support, u.s. gov't, non-p.h.s.; journal article; research support, n.i.h., extramural · DOI 10.1021/ja406444xTET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine.
Cadet J, Wagner JR.
Mutat Res Genet Toxicol Environ Mutagen · research support, non-u.s. gov't; review; journal article · DOI 10.1016/j.mrgentox.2013.09.001Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.
Booth MJ, Ost TW, Beraldi D, Bell NM, Branco MR, Reik W, Balasubramanian S.
Nat Protoc · research support, non-u.s. gov't; research-article; journal article · DOI 10.1038/nprot.2013.115Potential functional roles of DNA demethylation intermediates.
Song CX, He C.
Trends Biochem Sci · research-article; journal article; research support, n.i.h., extramural · DOI 10.1016/j.tibs.2013.07.003Cytosine modifications in neurodevelopment and diseases.
Yao B, Jin P.
Cell Mol Life Sci · research support, non-u.s. gov't; review-article; review; journal article; research support, n.i.h., extramural · DOI 10.1007/s00018-013-1433-yA convenient method for selective detection of 5-hydroxymethylcytosine and 5-formylcytosine sites in DNA sequences.
Mao W, Hu J, Hong T, Xing X, Wang S, Chen X, Zhou X.
Org Biomol Chem · research support, non-u.s. gov't; journal article · DOI 10.1039/c3ob40447aGenome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.
Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio AC, Fung HL, Zhang K, Zhang Y.
Cell · research support, non-u.s. gov't; research-article; journal article; research support, n.i.h., extramural · DOI 10.1016/j.cell.2013.04.002Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.
Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, Li L, Xu GL, Jin P, He C.
Cell · research support, non-u.s. gov't; research-article; journal article; research support, n.i.h., extramural · DOI 10.1016/j.cell.2013.04.001Selective chemical labelling of 5-formylcytosine in DNA by fluorescent dyes.
Hu J, Xing X, Xu X, Wu F, Guo P, Yan S, Xu Z, Xu J, Weng X, Zhou X.
Chemistry · research support, non-u.s. gov't; journal article · DOI 10.1002/chem.2013000825-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription.
Kellinger MW, Song CX, Chong J, Lu XY, He C, Wang D.
Nat Struct Mol Biol · research-article; journal article; research support, n.i.h., extramural · DOI 10.1038/nsmb.2346Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y.
Science · research support, non-u.s. gov't; research-article; journal article; research support, n.i.h., extramural · DOI 10.1126/science.1210597